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Systems Engineer Salary and Equity in San Diego 2026

How much does a Systems Engineer expect to make at San Diego-based startups? The average expected salary for Systems Engineers in San Diego-based startups is 125k per year, with a range from 70k to 190k. These amounts were gathered from Wellfound self-reported data and represent the median salary range. The salary range for Systems Engineers in San Diego startups varies depending on factors such as industry, experience, skills, and startup stage.

124.6k

Average Salary

3 years

Average years of experience

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Salary

By quarter
The average salary for a Systems Engineer in San Diego is $124,625, which is 9.3% higher than the average San Diego startup salary of$114,042. Systems Engineer salaries in San Diego are based on exclusive Wellfound data. All data is updated on a weekly basis. Factors that may influence salary include: years of experience, title, size of company, skill-set, and industry.

Top of market

$159,250/yr

Range $145k - $190k

Average

$124,625/yr

Range $70k - $155k

Below Average

$113,750/yr

Range $70k - $145k


Industries

The highest average salary a Systems Engineer in San Diego can get in Enterprise Software, that is $155,000. This pay is 2.9% higher than the average Systems Engineer salary in San Diego, which is $150,700. The highest-paying industries in 2023 are: Enterprise Software (avg $155,000 per year), Infrastructure (avg $155,000 per year), Automotive (avg $155,000 per year).

Years of experience

Below Average

Average

Top of Market

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