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Novoalign is the market leader in commercial alignment software for Next-generation sequencing. Optimized for the Illumina platform, Novoalign has been in the number 1 role since the beginning with over 200 licensed users.

Packed with unsurpassed features:
Mapping with base quality values.
Alignment quality scores using posterior alignment probability.
Paired end alignment.
Mismatches and gaps of up to 50% of read length.
Use of ambiguous codes in reference sequences can be used to reduce allelic bias.
Bisulphite alignment mode (except for NovoalignCS) for analysis of methylation status.
Automatic base quality calibration.
Handles single end and paired end reads up to 950bp/read.
In built adapter trimming and base quality trimming.
Option for amplicon primer trimming.

NovoWorx is a genomics workflow system designed for non-programmatic access by biologists. It offers flexible workflows for NGS tasks such as basic alignment, exome analysis, RNASeq and others.