Senior Bioinformatics Scientist
Josh McMenemy
Duke Biomedical Engineering. Software Engineering experience at Synthego - a rapid growth biotech startup. Research wet lab experience.
Duke Biomedical Engineering. Software Engineering experience at Synthego - a rapid growth biotech startup. Research wet lab experience.
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Experience
Duke University
Undergraduate Research Fellow
Employee
Projects
Extract and explore data from different apps and devices
Full Stack developer, React Js, Node.js, ExpressJS · Allowed users to easily sync different devices and apps (Fitbit, RescueTime, and LastFM) and then… · More explore their data through an interactive stats tool.
Designed and implemented a majority of the codebase.
Designed and implemented a majority of the codebase.
A composable charting library built on React components
Developer, React Js, SVG, Javascript · Recharts - Re-designed charting library built with React and D3.
Architected and implemented a… · More customizable error bar component using react and SVG that can be attached to all cartesian charts.
Learned how to navigate a large codebase, use testing best practices, and meet product demands.
Architected and implemented a… · More customizable error bar component using react and SVG that can be attached to all cartesian charts.
Learned how to navigate a large codebase, use testing best practices, and meet product demands.
A web app to align DNA sequences
Software Engineer, Golang, React Js, Docker · Sequentify is an open source web app that aligns DNA sequences. The purpose of the app is to serve as an… · More educational tool since it allows exploration of the alignment function through easy changing of function variables. However, it is also useful for researchers who just want a quick customizable alignment between sequences. For more complicated alignments, use NCBI’s tool.
Wrote the entire codebase.
Learned how to:
* Use Go concurrency paradigms for efficient batch DNA alignments
* Use Docker for seamless deployment and development
* Use Travis CI for continuous integration
Wrote the entire codebase.
Learned how to:
* Use Go concurrency paradigms for efficient batch DNA alignments
* Use Docker for seamless deployment and development
* Use Travis CI for continuous integration
Education
About
Achievements
Led backend development for Synthego’s gene edit analysis web app which has processed hundreds of thousands of experiments (https://ice.synthego.com). One of twenty students in my engineering class selected as a National Academy of Engineering Grand Challenge Scholar, which provided funding and mentorship to complete and present a proposed research project.
Describe the most impressive thing you've done.
Skills
Locations